diff -rN -u old-lentil/src/Lentil/File.hs new-lentil/src/Lentil/File.hs
--- old-lentil/src/Lentil/File.hs	2015-07-20 22:43:23.177620724 +0200
+++ new-lentil/src/Lentil/File.hs	2015-07-20 22:43:23.177620724 +0200
@@ -13,10 +13,13 @@
 import Lentil.Types
 import Lentil.Parse.Run
 
+import System.Directory
 import System.FilePath
 import System.FilePath.Find
+import Data.Either
 import Data.Monoid
 import Control.Applicative
+import Control.Exception.Base
 
 import qualified Data.List as L
 
@@ -36,7 +39,12 @@
 --------------
 
 findIssues :: [FilePath] -> [FilePath] -> IO [Issue]
-findIssues is xs = find always (findClause is xs) "." >>= issueFinder
+findIssues is xs =
+  (mapM (try . canonicalizePath) is :: IO [Either SomeException FilePath]) >>=
+  return . rights >>=
+  mapM (\i -> find always (findClause [i] xs) i) >>=
+  return . concat >>=
+  issueFinder
 
 -- fp to include, fp to exclude, clause
 findClause :: [FilePath] -> [FilePath] -> FindClause Bool
@@ -47,6 +55,6 @@
                     (not <$> fmap getAny xc)
     where
           fp2fc :: FilePath -> FindClause Any
-          fp2fc f = Any . L.isPrefixOf (combine "." f) <$> filePath
+          fp2fc f = Any . L.isPrefixOf f <$> filePath
           -- TODO: combine funziona su windows? [feature:intermediate]